HPC for Bioinformatics Agenda
Tufts University Bioinformatics Workshop Series - 2024 Fall
Workshop 1: Introduction to HPC
Oct 9, 2024, 1-3pm
- Tufts HPC Terminologies
- Getting to Know Tufts HPC Cluster Resources
- Tufts HPC Cluster Access
- Getting Work Done on Tufts HPC Cluster with SLURM
Workshop 2: Getting started with Bioinformatics on Tufts HPC
Oct 10, 2024, 1-3pm
- Linux/Unix command line basics
- Available bioinformatics resources/tools on Tufts HPC
- How to run bioinformatics analysis on Tufts HPC
Workshop 3:
Oct 17, 2024, 1-3pm
- Application Installation from Source Codes
- R package Installation
- Conda Environment Management, Jupyer Kernel and Modules
- Simplying Conda Environment Management with conda-env-mod
Workshop 4:
Oct 24, 2024, 1-3pm
- Parallelizing Workflows with Slurm Job Arrays
- Nextflow and nf-core
- nf-core: Community Curated Bioinformatics Pipelines
Workshop Flyer
Presenters:
- Delilah Maloney, Senior HPC Specialist
- Yucheng Zhang, Bioinformatics Engineer
- Shirley Xue Li, Bioinformatician