HPC for Bioinformatics - Tufts University Bioinformatics Workshop Series - 2024 Fall
Workshop 1: Introduction to HPC
Workshop 2: Getting started with Bioinformatics on Tufts HPC
-
Linux/Unix command line basics
- How to run bioinformatics analysis on Tufts HPC
Workshop 3:
- Application Installation from Source Codes
- R package Installation
- Conda Environment Management, Jupyer Kernel and Modules
- Simplying Conda Environment Management with conda-env-mod
Workshop 4:
- Parallelizing Workflows with Slurm Job Arrays
- Bioinformatics Workflow Manager Nextflow
- nf-core: Community Curated Bioinformatics Pipelines