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Dependencies for RNA sequencing workshop

Description:

To follow along with the practice in this course, you will use command line tools and R installed on your computer. Additionally, you will have to install the softwares and R libraries we will be using.

Full list of Dependencies:

  1. Download Raw data for this course

  2. Command line tools for preprocessing reads and read alignment: FASTQC STAR samtools subread

  3. Download and install Interactive Genome Viewer (IGV)

  4. R and its libraries for differential expression analysis: R studio

    Bioconductr libraries (check out each library for installation guide):

    Regular libraries (install by entering install.packages("name")):

Scripts you will be using:

Workshop Schedule